2026
Structural and functional annotation of Glaciozyma antarctica hypothetical proteins using integrated modeling pipelines
Extremophiles 30(1):2
Structural bioinformaticsPublications
The research record.
A selection of 68 publications spanning 2003–2026, covering structural bioinformatics, RNA biology, genomics, molecular computing and collaborative applications.
68 publications
2026
Structural modeling and docking analysis of canonical and novel resistance-associated missense mutations in Sudanese Escherichia coli
Scientific Reports
Biomedicine & biotechnology2025
Enhancement of lysozyme physicochemical stability and biocatalytic activity through direct electrostatic complexation with cellulose nanospheres
Carbohydrate Polymers, Volume 367
Biomedicine & biotechnology2025
Reverse vaccinology and immunoinformatics approaches for multi-epitope vaccine design against Klebsiella pneumoniae reveal a novel vaccine target protein
Journal of Genetic Engineering and Biotechnology, Volume 23, Issue 3,
Biomedicine & biotechnology2025
The impact of mutations on TP53 protein and MicroRNA expression in HNSCC: Novel insights for diagnostic and therapeutic strategies
PLOS ONE, 20(5): e0307859
Biomedicine & biotechnology2025
Understanding structural and functional diversity of ATP-PPases using protein domains and functional families in CATH database
Structure
Structural bioinformatics2025
Imbalance in spatiotemporal analysis of narcotics-related activities: a bibliometric review
Humanit Soc Sci Commun. 12, 215
Data & infrastructure2025
Genomic insights into the biogeography and evolution of Galápagos iguanas
Molecular Phylogenetics and Evolution, Volume 204,108294
Genomics & evolution2024
Why is binding of a divalent metal cation to a structural motif containing four carboxylate residues not accompanied by a conformational change?
Protein Science. 33(12):e5206
Structural bioinformatics2024
Biochemical and in silico structural characterization of a cold-active arginase from the psychrophilic yeast, Glaciozyma antarctica PI12
Extremophiles, 28 (1), 15
Structural bioinformatics2024
Real-time viral detection through electrolyte-gated field effect transistors: possibility of rapid COVID-19 detection
Critical Reviews in Solid State and Materials Sciences, 49 (2), 194-220
Biomedicine & biotechnology2024
Structural dissection of two redox proteins from the shipworm symbiont Teredinibacter turnerae
IUCrJ, 11 (2), 260-274
Structural bioinformatics2023
Unleashing the potential of gallium oxide: A paradigm shift in optoelectronic applications for image sensing and neuromorphic computing applications
Materials Today Physics. 101279
Data & infrastructure2023
Structural and functional analyses of Burkholderia pseudomallei BPSL1038 reveal a Cas-2/VapD nuclease sub-family
Communications Biology, 6 (1), 920
Structural bioinformatics2023
Dissecting the biology of Rafflesia species: Current progress and future directions made possible with high-throughput sequencing data
Plant and Cell Physiology,
Genomics & evolution2023
Modeling and computational characterization of a Xanthomonas sp. Hypothetical protein identifies a remote ortholog of Burkholderia Lethal Factor 1
Journal of Biomolecular Structure and Dynamics,
Structural bioinformatics2023
Biofilm Signaling, Composition and Regulation in Burkholderia pseudomallei
Journal of Microbiology and Biotechnology,
Biomedicine & biotechnology2022
GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA
Nucleic Acids Research, 50(W1):W375–83
Structural bioinformatics2022
Molecular basis of specificity and deamidation of eIF4A by Burkholderia Lethal Factor 1
Communications Biology,
Structural bioinformatics2021
Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures
International Journal of Molecular Sciences, 2021; 22(16):8553
RNA biology2021
Calcium Ion-Selective Electrode Based on the Facile Synthesis of Cuo Over Cu Wires. -
Journal of Materials Science: Materials In Electronics, 1-12
Biomedicine & biotechnology2021
Regulation of Glycine Cleavage and Detoxification by a Highly Conserved Glycine Riboswitch in Burkholderia spp
Current Microbiology. Aug;78(8):2943-2955
RNA biology2020
Side chain similarity comparisons for integrated drug repositioning and potential toxicity assessments in epidemic response scenarios: the case for COVID-19
Computational and Structural Biotechnology Journal, 18, 2931–2944
Biomedicine & biotechnology2020
Molecular characterisation of Eimeria tenella porin, a potential anticoccidial drug target
Sains Malaysiana, 49 (4), 755-764
Biomedicine & biotechnology2019
Identification of structural motifs using networks of hydrogen bonded base interactions in RNA crystallographic structures
Crystals, 9(11), 550
RNA biology2019
Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning
Nucleic Acids Research, Volume 47, Issue W1, Pages W350–W356
Biomedicine & biotechnology2018
Computational Discovery and Annotation of Conserved Small Open Reading Frames in Fungal Genomes
BMC Bioinformatics, 19: 551
Genomics & evolution2018
Comparative analysis of nucleus-encoded plastid-targeting proteins in Rafflesia cantleyi against photosynthetic and non-photosynthetic representatives reveals orthologous systems with potentially divergent functions
Scientific Reports, 8:17258
Genomics & evolution2018
Analysis and Filtering for Redundant Data of Hydrogen-bonded Base Interaction Clusters in RNA 3-Dimensional Structures
Sains Malaysiana, 47(8), 1731–1739
RNA biology2018
Unravelling the adaptation strategies employed by Glaciozyma antarctica PI12 on Antarctic sea ice
Marine Environmental Research,
Genomics & evolution2018
The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
PLOS ONE, (1): e0189947
Genomics & evolution2017
Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei
Scientific Reports, 7: 17173
RNA biology2017
In silico analysis and 3D structure prediction of a chitinase from psychrophilic yeast Glaciozyma antarctica PI12
Malaysian Applied Biology, 46(1):117-123
Genomics & evolution2017
Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data
BMC Bioinformatics, 18(S1): 1–7
Genomics & evolution2017
Evidence-based gene models for structural and functional annotations of the oil palm genome
Biology Direct. 12:21
Genomics & evolution2016
Nematode peptides with host-directed anti-inflammatory activity rescue Caenorhabditis elegans from a Burkholderia pseudomallei infection
Frontiers in Microbiology, Vol 7, 1436
Biomedicine & biotechnology2016
Molecular characterisation of glycogen synthase kinase-3 from Eimeria tenella | Pencirian molekul glikogen sintase kinase-3 Dari Eimeria tenella
Sains Malaysiana, 45(12):1947-1957
Biomedicine & biotechnology2016
Rafflesia Tuanku-Halimii n. (Rafflesiaceae), A new species from peninsular Malaysia
Sains Malaysiana, 45(11):1589-1595
Genomics & evolution2016
Perigone Lobe Transcriptome Analysis Provides Insights into Rafflesia cantleyi Flower Development
PLOS ONE, Vol 11 (12) e0167958
Genomics & evolution2016
An analysis of simple computational strategies to facilitate the design of functional molecular information processors
BMC Bioinformatics, Vol 17(1), 438
Molecular computing2016
Self-assembly programming of DNA polyominoes
Journal of Biotechnology, Vol 236, 141-151
Molecular computing2016
InterRNA: a database of base interactions in RNA structures
Nucleic Acids Research, Vol. 44
RNA biology2015
Reconstructing gene regulatory networks from knock-out data using Gaussian Noise Model and Pearson Correlation Coefficient
Computational Biology and Chemistry, Vol 59, 3-14
Biomedicine & biotechnology2015
DNA Tetrominoes: The construction of DNA nanostructures using self-organised heterogeneous deoxyribonucleic acids shapes
PLOS ONE, Vol. 10(8) and pg. e0134520
Molecular computing2015
DNA amplification optimization and cloning of several target genes from Burkholderia pseudomallei
Jurnal Teknologi, 77(25):153-158
Biomedicine & biotechnology2015
Characterization of Burkholderia pseudomallei protein BPSL1375 validates the putative hemolytic activity of the COG3176 N-Acyltransferase family
BMC Microbiology, 15:270
Biomedicine & biotechnology2014
Draft Genome Sequence of Erwinia mallotivora BT-MARDI, Causative Agent of Papaya Dieback Disease
Genome Announcements, e00375
Genomics & evolution2014
Crystallization and preliminary crystallographic studies of the hypothetical protein, BPSL1038, from Burkholderia pseudomallei
Acta Crystallographica Section F – Structural Biology Communications. Vol. 70(12) p1697-1700
Structural bioinformatics2014
The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties
BMC Genomics, 15: 635
Genomics & evolution2014
A comparative genomic analysis of the alkalitolerant soil bacterium Bacillus lehensis G1
Gene, 545 (2): 253–261
Genomics & evolution2014
COGNAC: a webserver for searching and annotating hydrogen bonded base interactions in RNA 3-dimensional structures
Nucleic Acids Research, Vol. 42
Structural bioinformatics2013
Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches
PLOS ONE, 8(9): e73984
RNA biology2013
IMAAAGINE: a webserver for the searching of hypothetical 3D amino acid side chain arrangements in the Protein Data Bank
Nucleic Acids Research, Vol. 41: W432-W440
Structural bioinformatics2012
Proteins of unknown function in the Protein Data Bank (PDB): an inventory of true uncharacterized proteins and computational tools for their analysis
International Journal of Molecular Sciences, 13(10): 12761-12772
Structural bioinformatics2012
Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs
BMC Genomics, 13(S7), S13
RNA biology2012
Comparative genome sequence analysis reveals the extent of diversity and conservation for glycan associated proteins in Burkholderia spp
Comparative and Functional Genomics, Vol. 2012, Article 752867
Biomedicine & biotechnology2012
NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules
Nucleic Acids Research, Vol. 40, W35-W41
Structural bioinformatics2012
SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures
Nucleic Acids Research, Vol. 40, W380-W386
Structural bioinformatics2011
Novel base triples in RNA structures revealed by graph theoretical searching methods
BMC Bioinformatics, 12(S13), S2
RNA biology2011
A Burkholderia pseudomallei toxin inhibits helicase activity of translation factor eIF4A
Science, 334 (6057): 821-824
Structural bioinformatics2008
Computational approaches for investigating the three-dimensional structures of RNA
Malaysian Journal of Biochemistry and Molecular Biology, 16(2)
RNA biology2007
Bioinformatics Tools @ NBBNet: Online Infrastructure for the Management and Analysis of Biological Data
Journal of Information Technology and Multimedia. 3: pp31-42
Data & infrastructure2005
ProLysED: An integrated database and metaserver of bacterial protease systems
Applied Bioinformatics, 4(2): pp147-150
Biomedicine & biotechnology2005
EMASGRID -An NBBnet Grid Initiative for A Bioinformatics and Computational Biology Services Infrastructure in Malaysia
Lecture Notes in Computer Science, 3370, pp.117-124
Data & infrastructure2005
A Nationwide Biotechnology Outreach and Awareness Program for Malaysian High Schools
Electronic Journal of Biotechnology, Vol. 8, Issue 1, April 15 2005
Data & infrastructure2005
Solvent accessibility in native and isolated domain environments: General features and prediction of unsaturated bonds in a protein sequence
Biophysical Chemistry, 114, pp.63-69
Structural bioinformatics2003
Predicted Structure of the Cytochrome c Oxidase from Burkholderia pseudomallei
Electronic Journal of Biotechnology, Vol. 6, Issue 1, April 15 2003
Structural bioinformatics2003
NBBnet -The National Biotechnology and Bioinformatics Network: A Malaysian Initiative Towards a National Infrastructure for Bioinformatics
Electronic Journal of Biotechnology, Vol. 6, Issue 1, April 15 2003
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